Pattern

Pattern

Table 6.18. Pattern type members

MemberTypeAccessDescription
elementselementroArray of element data (masses, symbols, names, etc.)
anglesbound[]roArray of angle interactions in one molecule of the pattern
atomsatom[]roArray of atoms spanned by the pattern
bondsbound[]roArray of bond interactions in one molecule of the pattern
cogvector[]roArray of centres of mass of the molecules in the pattern
comvector[]roArray of centres of geometry of the molecules in the pattern
ffforcefield[]rwReference to the forcefield associated to the pattern (if any)
ffanglesffbound[]roList of unique forcefield angle terms in the pattern
ffbondsffbound[]roList of unique forcefield bond terms in the pattern
fftorsionsffbound[]roList of unique forcefield torsion terms in the pattern
fftypesffatomroArray of unique atom types used in the pattern
firstatomatom[]roReference to the first atom spanned by the pattern
firstatomidintroAtom ID of the first atom spanned by the pattern
fixedintrwWhether the coordinates of all atoms in the pattern are fixed in MC routines
lastatomatom[]roReference to the last atom spanned by the pattern
lastatomidintroAtom ID of the last atom spanned by the pattern
namestringrwName of the pattern
nanglesintroNumber of angles in one molecule of the pattern
natomsintroTotal number of atoms spanned by the pattern
nbondsintroNumber of bonds in one molecule of the pattern
nffanglesintroNumber of unique angle terms used in the pattern
nffbondsintroNumber of unique bond terms used in the pattern
nfftorsionsintroNumber of unique torsion terms used in the pattern
nfftypesintroNumber of unique atom types used in the pattern
nmolatomsintroNumber of atoms in one molecule of the pattern
nmolsintroNumber of molecules (repeat units) in the pattern
ntorsionsintroNumber of torsion interactions in one molecule of the pattern
torsionsbound[]roArray of torsion interactions in one molecule of the pattern